Basic Information
VIS ID
TVIS10011117
Fusion event
HBV-chr21 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2089
Orient
+
Integrated sequence
CTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGG| |GGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATATGGGCCTAAA
Host Sequence
Chromosome
chr21
Cytoband
q22.13
Reference genome
GRCh37/hg19
Start
39324324/37952021 (Hg38)
End
39324324/37952021 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7c/Upstream/2231213; hsa-mir-3197/Downstream/1494989;
Nearest TSS
ENST00000624081/Upstream/35575; ENST00000478613/Downstream/169310;
Nearest CpG islands
None/Target, chr21-CpG: 261/Upstream/35057, chr21-CpG: 170/Downstream/708298
Nearby gene
KCNJ6(-35583) ; DSCR4(+101989) ;
Upstream sequence
CAGAGCTTGCAGCGCACTGCCCAGTGCTGGAAGTGGTGTGAGAATCAGGGAACTATtctgccaattagcagctgtgaggtcttggggaagtcaccacccg
Downstream sequence
tttgggcctcagtcccctcatctgtgaaatggacacgatttctagtatttgcagctatgaccttttctgGAGAATCAGAGTTTGGGTCCCCATTTTAGGT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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