KCNN2 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10011128
Fusion event
HBV-KCNN2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1823
Orient
-
Integrated sequence
TTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACT| |TTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAA
Host Sequence
Chromosome
chr5
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
113531953/114196256 (Hg38)
End
113531953/114196256 (Hg38)
Orient
+
Location type
Intronic
Target gene
KCNN2
miRNAs that regulate target gene
hsa-mir-26b-5p
Nearest miRNA
hsa-mir-10397/Upstream/3682341; hsa-mir-103a-1/Downstream/2059487;
Nearest TSS
ENST00000502646/Upstream/140250; ENST00000505491/Downstream/164689;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/139948, chr5-CpG: 180/Downstream/164887
Nearby gene
YTHDC2(-600969) ; KCNN2(+166063) ;
Upstream sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtaaccctaaccctaaccctaaccctaaccctaaccctaaccctaa
Downstream sequence
tggattcactttgttagtattttgtttcaaattttaacatctgtgttcataagggatattgttctatactttttatttcttgtgatatcttttatatcag
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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