Basic Information
VIS ID
TVIS10011160
Fusion event
HBV-chrX integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1713
Orient
-
Integrated sequence
AGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAA| |AGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCA
Host Sequence
Chromosome
chrX
Cytoband
q26.3
Reference genome
GRCh37/hg19
Start
136673783/137591624 (Hg38)
End
136673783/137591624 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1040664; hsa-mir-105-1/Downstream/1076087;
Nearest TSS
ENST00000429181/Upstream/17578; ENST00000411940/Downstream/1035453;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/16698, chrX-CpG: 84/Downstream/1119309
Nearby gene
ZIC3(-19524) ; LINC00889(+1023109) ;
Upstream sequence
AGTTACCTGGGCTCCTTTACCATAGTAATAGTTACCTTGGCACCTTTACCATAGTAATAGTCACTTGGGTATCTTTGCTGTAGTGGTTACCTGGATACCT
Downstream sequence
atgcctatcgtcttagctactcaggggctgagatgggaggatcgcttgagcccaggaggttgaggctacagtgagctgagatcacgccactgcactccag
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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