PIK3CD _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10011228
Fusion event
HBV-PIK3CD integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
745
Orient
-
Integrated sequence
GAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGA| |TGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACATTTAAACCCTAAC
Host Sequence
Chromosome
chr1
Cytoband
p36.22
Reference genome
End
9699426/9639368 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/487591; hsa-mir-101-1/Downstream/328013;
Nearby gene
TMEM201(-24491) ; PIK3CD(+12364) ;
Upstream sequence
CTAGGTGCTTTTCAAGATAGAGGGCTAACTACCGAGAGTGGGTATTTATCTAGAGAGATAGAGGCTTTTGGAGCAGGAGCACCCTAGGTAGTGGTGGATG
Downstream sequence
GGGCAGGGCCCAGCTCCATCCTGCTGAGCACCCCCGAGAGGGTAACCTATTTGCAAAGCTTTTACTCGTCTCTAAACCACTTTTGCTAAAACGTCTATTT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate