VISDB Viral Integration Site DataBase

VIS ID

TVIS10011262

Fusion event

HBV-SLC39A9 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

1051

Orient

-

Integrated sequence

GAAAACTTCCTATTAACAGGCCTATTGATTGGAAAGTATGTCAACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCTTTTACACAATGTGGTTATCCTGC| |GTTGATGCCTTTGTATGCATGTATTCAATCTAAGCAGGCTTTCACTTTCTCGCCAACTTACAAGGCCTTTCTGTGTAAACAATACCTGAACCTTTACCCC

Chromosome

chr14

Cytoband

q24.1

Reference genome

Start

End

69929509/69462792 (Hg38)

Orient

-

Location type

downstream

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-215-5p ; hsa-mir-192-5p ; hsa-mir-3613-3p ; hsa-mir-8080 ; hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-424-5p ; hsa-mir-497-5p ; hsa-mir-545-3p ; hsa-mir-6792-5p ; hsa-mir-6838-5p ; hsa-mir-203a-3p ; hsa-mir-218-1-3p ; hsa-mir-224-3p ; hsa-mir-522-3p ; hsa-mir-510-3p ; hsa-mir-659-3p ; hsa-mir-2052 ; hsa-mir-3679-3p ; hsa-mir-3591-5p ; hsa-mir-8066 ; hsa-mir-151a-5p ; hsa-mir-151b ; hsa-mir-3150b-3p ; hsa-mir-4784 ; hsa-mir-634 ; hsa-mir-1226-3p ; hsa-mir-4530 ; hsa-mir-5584-5p ; hsa-mir-6873-5p ; hsa-mir-432-3p ; hsa-mir-485-5p ; hsa-mir-218-5p ; hsa-mir-192-3p ; hsa-mir-891b ; hsa-mir-4307 ; hsa-mir-33a-3p ; hsa-mir-4474-3p ; hsa-mir-7108-5p ; hsa-mir-3975 ; hsa-mir-142-3p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-4280 ; hsa-mir-133a-5p ; hsa-mir-3117-5p ; hsa-mir-4490 ; hsa-mir-5190 ; hsa-mir-4478 ; hsa-mir-4419b ; hsa-mir-3929 ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-4684-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-520f-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-6832-3p ; hsa-mir-4691-3p ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-888-5p

Nearest miRNA

hsa-mir-208a/Upstream/2020862; hsa-mir-1185-1/Downstream/3054028;

Nearest TSS

Nearest CpG islands

None/Target, chr14-CpG: 35/Upstream/64436, chr14-CpG: 142/Downstream/20950

Upstream sequence

CAAACCACAGTGGATTCATTTCATAGGGCAGAGTTGTTATATGAGTAGATAGATGCTATGAACAACTGACCCTGGAAATTAAAGAGATTTGATTAGAAAC

Downstream sequence

GTGACGTGTGAATTTGATAAATGTTTTTCTCCCTCTGTGGACTTATGGTTAGTCATTAGATTTCATTAAATACTACTGGCCCACTTTGTGCTGGTTTTCT