Basic Information
VIS ID
TVIS10011291
Fusion event
HBV-chr19 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
1908
Orient
+
Integrated sequence
CAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGAC| |ATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAG
Host Sequence
Chromosome
chr19
Cytoband
q13.43
Reference genome
GRCh37/hg19
Start
57872269/57360901 (Hg38)
End
57872269/57360901 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA19A
Nearest miRNA
hsa-let-7e/Upstream/1972659; hsa-mir-10394/Downstream/973787;
Nearest TSS
ENST00000633603/Upstream/8889; ENST00000596755/Downstream/2576;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/9033, chr19-CpG: 31/Downstream/2488
Nearby gene
ZNF304(-1004) ; TRAPPC2B(+2610) ;
Upstream sequence
tctgcctcggcctcccaaggtgctgggattacaggtgtgagtcactgcgcccagccTGGCTGGGGTTTTTTTATGTGAGTTTCACACACCTCTGAGTAAG
Downstream sequence
TGGCTTGCAGACAGAGAAGTTAACAACTTTGGCTGTTAGCTTGAACctgtgatttatgaataccaaaaagacaaatacagaatctaaggaaacaCATAAC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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