Basic Information
VIS ID
TVIS10011293
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
2790
Orient
-
Integrated sequence
GTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAACTAGACACTATTTACACACTCTATGGAAGGCGGGTATATTATATAAGAGAGA| |AACAACACATAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGATCTACAGCATGGGGCAGAATCTTTCCACCAGCAATCCTCTGGGATTCTT
Host Sequence
Chromosome
chr2
Cytoband
q12.2
Reference genome
GRCh37/hg19
Start
107275696/106659240 (Hg38)
End
107275696/106659240 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/4226874; hsa-mir-10b/Downstream/2482250;
Nearest TSS
ENST00000437798/Upstream/121161; ENST00000425419/Downstream/170839;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/171643, chr2-CpG: 39/Downstream/183827
Nearby gene
RGPD3(-190895) ; ST6GAL2(+142360) ;
Upstream sequence
CCATTGCAGATCCTCCTCCAAACCGACTCCTGTGAAATATGACTGTAGGCAGGTCCCATCTGTTACTGTCCTGGCACCTAGGACCCCACCCAGCATGGAT
Downstream sequence
CCTCTTCCCATCACTCTTTCTTTCTCATCCAGCCTTCCCTACCCCCACCTATGCTCATCTTGCCTATTTTCTGGTTGACTGTTTACCACTCCTTTTACTC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate