Basic Information
VIS ID
TVIS10011297
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2218
Orient
-
Integrated sequence
GGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTT| |CTTGTCTCACTTTTGGAAGAGAAACAGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTAT
Host Sequence
Chromosome
chr2
Cytoband
q14.1
Reference genome
GRCh37/hg19
Start
114328324/113570747 (Hg38)
End
114328324/113570747 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S ; FRA2B
Nearest miRNA
hsa-mir-1285-2/Upstream/1799613; hsa-mir-10b/Downstream/12212;
Nearest TSS
ENST00000437798/Upstream/28075; ENST00000446648/Downstream/6635;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/16134, chr2-CpG: 110/Downstream/12977
Nearby gene
FOXD4L1(-69597) ; FAM138B(+6635) ;
Upstream sequence
acagctactaagtagcacagctggggctcaaaaccagagccatgtgatcagatggcccatattctttTTGTTCCCTCCCATCAACCAAGCCCAGGCCCAT
Downstream sequence
GGCTGAGCATGATGGCCAAGCAGGGAGGAGGGTCAGCTCCTCTTCAAGGAAGAAAACAGCATGCTGTTCTTTATATATGTAAATGATGTTCTGTTCCTCA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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