Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10011305
Fusion event
HBV-FARP2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1765
Orient
-
Integrated sequence
TCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAG| |GTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGT
Host Sequence
Chromosome
chr2
Cytoband
q37.3
Reference genome
End
242401569/241462154 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/1006065; hsa-mir-3133/Downstream/15751;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/105368, chr2-CpG: 182/Downstream/45448
Upstream sequence
CGGAAAACTGGGCCCGGGGTATGTTCCACGTCTGCATCAGGAAGTGCACCAGCAAGTCTGGCGCTCTGATGCAGGCACACTTAGAATGCGCACTGTTTGC
Downstream sequence
TCATTTTAATGACTTTTGTATGGGTTAGGTTTAATAATTTATAAGCACACACACACTCATGGACCTGTGTCTGCTAACCAGCTATGCCACTGGCAGTGAT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.