Basic Information
VIS ID
TVIS10011323
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2161
Orient
+
Integrated sequence
GCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCA| |GTTATGTCAACACTAATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGAGAAACAGTTATAGAGTATTTGGT
Host Sequence
Chromosome
chr3
Cytoband
q26.31
Reference genome
GRCh37/hg19
Start
171745481/172027691 (Hg38)
End
171745481/172027691 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/920932; hsa-mir-1224/Downstream/3341849;
Nearest TSS
ENST00000440867/Upstream/126951; ENST00000423424/Downstream/11937;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/217023, chr3-CpG: 140/Downstream/12012
Nearby gene
TMEM212(-168373) ; FNDC3B(+11937) ;
Nearest cancer related gene
FNDC3B(OG, +11937) ;
Upstream sequence
gagaatgactttgatgagttgagagaagaaggcttcagatgaccaaacttctccgagctaaaggaggaagttcgaacccatcccaaagaagttgaaaacc
Downstream sequence
aaaggagatctagctttttgccaaattgattacacgcaaaattcttcatttgccagttttcacgtagtttttctcgtccctttcaggtcttcgatcctgt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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