Basic Information
VIS ID
TVIS10011373
Fusion event
HBV-chr7 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2082
Orient
+
Integrated sequence
ACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTT| |TGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATATGG
Host Sequence
Chromosome
chr7
Cytoband
q36.3
Reference genome
GRCh37/hg19
Start
159075868/159283179 (Hg38)
End
159075868/159283179 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10399/Upstream/691483;
Nearest TSS
ENST00000635602/Upstream/138222;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/51841, None/Downstream
Nearby gene
VIPR2(-138219) ;
Upstream sequence
TACTTGTATCAAGTACACCAAGACTTTTAATCCATTTTGTAATCAAACAGGGCATCTCTCTGGGCccctatgagcctgagatgacagcgtagttccaccc
Downstream sequence
aagaggtgattaggtcatgagggctccacctttcctgaatgaaattaggccgccttataaaagggcttcatggagggaatctgttttgcttgcccttctg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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