Basic Information
VIS ID
TVIS10011384
Fusion event
HBV-chr8 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1816
Orient
-
Integrated sequence
CTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCA| |TGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCC
Host Sequence
Chromosome
chr8
Cytoband
q12.1
Reference genome
GRCh37/hg19
Start
58514051/57601492 (Hg38)
End
58514051/57601492 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/14705217; hsa-mir-10400/Downstream/4113296;
Nearest TSS
ENST00000518652/Upstream/108593; ENST00000518934/Downstream/144657;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/321167, chr8-CpG: 99/Downstream/392899
Nearby gene
LINC00588(-316761) ; FAM110B(+393062) ;
Upstream sequence
TGAAATGAGAAGATCACAAACTGCGGTAAAAAGAGATCTGAGTGAGAGAAAAGTAAGATCAAAAGGGAGCTTTCCAAAAAAAAAAAAAAATACGGAAAAT
Downstream sequence
CAGTTGTGAGAATGGAAACCGATGTGAATTATAGCGTGCTCAAATCATAATAGGTTATATTTCCTGAACAAAGATGGGGAAAATAAAGCATTACTGCATA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate