Basic Information
VIS ID
TVIS10011386
Fusion event
HBV-chr8 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|
Start
3110
Orient
+
Integrated sequence
GGGTTTCACCCCACCGCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATACTACAAACTTTGCCAGCAAATCCGCCTCCTGCCTCCACCAAT| |CGCCAGTCAGGAAGGCAGCCTACCCCGCTGTCTCCACCTTTGAGAAACACTCATCCTCAGGCCATGCAGTGG
Host Sequence
Chromosome
chr8
Cytoband
q21.13
Reference genome
GRCh37/hg19
Start
78199897/77287661 (Hg38)
End
78199897/77287661 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/320811; hsa-mir-10400/Downstream/2044527;
Nearest TSS
ENST00000518652/Upstream/286617; ENST00000524014/Downstream/111411;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/286840, chr8-CpG: 46/Downstream/1228537
Nearby gene
PEX2(-286617) ; PKIA(+1228439) ;
Upstream sequence
tcatgctacctgacttcaaactatactacaaggctatagtaaccaaaacagcatggtactggtaccaaaacagatatatagaccaatggagcagaataga
Downstream sequence
gatctcctctctgctgagagctgggcagaaatcgtgactaccagctgcagagagtagttacccagtccagggtctcctttctgctgagggctggacagat
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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