VISDB Viral Integration Site DataBase

VIS ID

TVIS10011455

Fusion event

HBV-GALNT2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

1224

Orient

-

Integrated sequence

TGTAAACAATACCTGAACCTTTACCCCGTTGCCCGGCAACGGCCAGGTCTGTGCCAAGTGTTTGCTGACGCAACCCCCACTGGCTGGGGCTTGGTCATGG| |GCCATCAGCGCATGCGTGGAACCTTTTCGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTTGTTTTGCTCGCAGCAGGTCTGGAGCAAACAT

Chromosome

chr1

Cytoband

q42.13

Reference genome

Start

End

230376983/230241237 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-7-5p ; hsa-mir-98-5p ; hsa-let-7b-5p ; hsa-mir-1226-3p ; hsa-mir-99b-3p ; hsa-mir-7855-5p ; hsa-mir-6515-5p ; hsa-mir-4443 ; hsa-mir-6514-3p ; hsa-mir-7977 ; hsa-mir-550a-5p ; hsa-mir-550a-3-5p ; hsa-mir-1271-3p ; hsa-mir-4710 ; hsa-mir-4792 ; hsa-mir-650 ; hsa-mir-3612 ; hsa-mir-6811-3p ; hsa-mir-214-5p ; hsa-mir-1909-5p ; hsa-mir-432-5p ; hsa-mir-5690 ; hsa-mir-519e-3p ; hsa-mir-515-3p ; hsa-mir-33b-3p ; hsa-mir-6813-3p ; hsa-mir-3200-3p ; hsa-mir-6884-5p ; hsa-mir-485-5p

Nearest miRNA

hsa-mir-101-1/Upstream/1779085; hsa-mir-1182/Downstream/778591;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/172775, chr1-CpG: 24/Downstream/38359

Upstream sequence

ttataatagctgcttttaaatcctcccctgctaattccaacctctgggtcatctcagggtgaacttctgatgactttttttctctttgatgtggtctcca

Downstream sequence

ttttcctgtttcttctcatgtgtagtggttttttattttataattgacattgtggatgatatgttgtagaaacactggattatgttatctttctctaaag