ZNF236 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10011536
Fusion event
HBV-ZNF236 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|precore/core protein|
Start
1814
Orient
+
Integrated sequence
GACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCAC| |CATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGAC
Host Sequence
Chromosome
chr18
Cytoband
q23
Reference genome
End
74679067/76967111 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-1-2/Upstream/4113729;
Upstream sequence
ATGTGATTCGTGAAATGTGTTATTTGGTTGTTGGAGGTGATGTGATTCGTGAGATGTGTTATTTGGTTGTTGGAGGTGATGTGATTCGTGAGATGTGTTA
Downstream sequence
TTTGGTTGTTGGAGgtgatgtgattcgtgagatgtgttatttggttgttggaggtgatgtgattcgtgagatgtgttatttggttgttggaggtgatgtg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate