Basic Information
VIS ID
TVIS10011548
Fusion event
HBV-LINC01934 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|precore/core protein|
Start
1819
Orient
+
Integrated sequence
TTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGC| |AACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTA
Host Sequence
Chromosome
chr2
Cytoband
q31.3
Reference genome
End
182000597/181135870 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/1274962; hsa-mir-1244-1/Downstream/169723;
Nearby gene
UBE2E3(-72447) ; MIR4437(+169723) ;
Upstream sequence
tcatacctcaaaatgataaagacatatttgatgaactcacagttaatatcatactgaacagataaaaattaaaagttgttctactaacatctggaacaag
Downstream sequence
aaaaggatgacttcttttaccacttttattcaacatagttctagaagtcctcgacagagcagttaggcaaggtaaagaaataaatggtatctgaatagga
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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