Basic Information
VIS ID
TVIS10011552
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1799
Orient
-
Integrated sequence
GAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGG| |TCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGG
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
GRCh37/hg19
Start
194971583/194106859 (Hg38)
End
194971583/194106859 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10b/Upstream/4973748; hsa-mir-1244-1/Downstream/12676375;
Nearest TSS
ENST00000437798/Upstream/208492; ENST00000438505/Downstream/237410;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/1910773, chr2-CpG: 150/Downstream/1549972
Nearby gene
PCGEM1(-1329958) ; SLC39A10(+1549949) ;
Upstream sequence
acacatatatatgtgtatatatacatatatgtgtatatatacatatatatgtgtatatatacacatatatatgtgtatatatacatatatatgtgttgtg
Downstream sequence
tatatacacatatatatgtgtatatatatgtatgtgtgtgtgtgtatatatatatataCACTTCCAGATGCCAAAGGTTGAATACAGAATGATGAAGTTC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate