Basic Information
VIS ID
TVIS10011559
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1817
Orient
+
Integrated sequence
TGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCAT| |GCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCT
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
81436706/81209582 (Hg38)
End
81436706/81209582 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/1342999; hsa-mir-10b/Downstream/4574018;
Nearest TSS
ENST00000437798/Upstream/339392; ENST00000448431/Downstream/257364;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/14174, chr2-CpG: 32/Downstream/257616
Nearby gene
CTNNA2(-560718) ; DHFRP3(+1647221) ;
Nearest cancer related gene
CTNNA2(TSG, -560718) ;
Upstream sequence
tcaaaaaatcaatgaatccaggagccagttttttgaaaagatcaacaaaattgatagaccactactagcaagactaataagaaaagagagaagaatcaaa
Downstream sequence
tagacacaataaaaaatgattaaggggtatcaccactgatcccacagaaatacaaactaccaccaagaatactataaacacctctttgcaaataaactag
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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