Basic Information
VIS ID
TVIS10011581
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
733
Orient
-
Integrated sequence
AAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTT| |CAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTTTGGGTATACAT
Host Sequence
Chromosome
chr3
Cytoband
p26.3
Reference genome
GRCh37/hg19
Start
484563/442880 (Hg38)
End
484563/442880 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Downstream/4807297;
Nearest TSS
ENST00000440867/Upstream/53435; ENST00000442809/Downstream/93351;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/133670, chr3-CpG: 182/Downstream/1655465
Nearby gene
CHL1(-33466) ; CNTN6(+650066) ;
Nearest cancer related gene
CHL1(OG, -33466) ;
Upstream sequence
TTGTCTTTTCTCTTGTGTTATATGTACAACTGCATTTATGCACCAAGTTGGAATTATATAGTACATATTTTCTTTGAAAATAAATACATCAAGGACACTT
Downstream sequence
ggctggggagagaaggtagggtgtcaggagtgcagaccatgggtgtttgagccacttcctaatgtaacttacttgtgccttcaggacctgctagagtcag
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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