VISDB Viral Integration Site DataBase

VIS ID

TVIS10011614

Fusion event

HBV-G3BP1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1801

Orient

-

Integrated sequence

GGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTC| |TGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGG

Chromosome

chr5

Cytoband

q33.1

Reference genome

Start

End

151185858/151806297 (Hg38)

Orient

-

Location type

downstream

Target gene

miRNAs that regulate target gene

hsa-mir-124-3p ; hsa-mir-30a-5p ; hsa-mir-23b-3p ; hsa-mir-1-3p ; hsa-mir-320b ; hsa-mir-941 ; hsa-mir-744-5p ; hsa-mir-18a-3p ; hsa-mir-193b-3p ; hsa-mir-484 ; hsa-mir-320a ; hsa-mir-186-5p ; hsa-mir-30b-5p ; hsa-mir-197-3p ; hsa-mir-1260b ; hsa-mir-577 ; hsa-mir-605-3p ; hsa-mir-4328 ; hsa-mir-4709-5p ; hsa-mir-5003-5p ; hsa-mir-5582-5p ; hsa-mir-518a-5p ; hsa-mir-527 ; hsa-mir-559 ; hsa-mir-548b-5p ; hsa-mir-548a-5p ; hsa-mir-548c-5p ; hsa-mir-622 ; hsa-mir-651-3p ; hsa-mir-548d-5p ; hsa-mir-548j-5p ; hsa-mir-548h-5p ; hsa-mir-548i ; hsa-mir-548w ; hsa-mir-548y ; hsa-mir-548o-5p ; hsa-mir-548ab ; hsa-mir-548ad-5p ; hsa-mir-548ae-5p ; hsa-mir-548ak ; hsa-mir-548am-5p ; hsa-mir-3973 ; hsa-mir-548ap-5p ; hsa-mir-548aq-5p ; hsa-mir-548ar-5p ; hsa-mir-548as-5p ; hsa-mir-548au-5p ; hsa-mir-548ay-5p ; hsa-mir-6830-5p ; hsa-mir-548bb-5p ; hsa-mir-4419a ; hsa-mir-4510 ; hsa-mir-6127 ; hsa-mir-6129 ; hsa-mir-6130 ; hsa-mir-6133 ; hsa-mir-6873-5p ; hsa-mir-3714 ; hsa-mir-3154 ; hsa-mir-3145-5p ; hsa-mir-6510-5p ; hsa-mir-6824-5p ; hsa-mir-3175 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-27b-5p ; hsa-mir-600 ; hsa-mir-6747-3p ; hsa-mir-6727-3p ; hsa-mir-4722-3p ; hsa-mir-6783-5p ; hsa-mir-942-3p ; hsa-mir-4802-3p ; hsa-mir-6891-5p ; hsa-mir-4789-3p ; hsa-mir-3173-3p ; hsa-mir-3139 ; hsa-mir-28-5p ; hsa-mir-708-5p ; hsa-mir-101-3p ; hsa-mir-6800-5p ; hsa-mir-582-5p ; hsa-mir-4710 ; hsa-mir-6739-5p ; hsa-mir-6733-5p ; hsa-mir-3153 ; hsa-mir-483-5p ; hsa-mir-4681 ; hsa-mir-376c-3p ; hsa-mir-7161-5p ; hsa-mir-8087 ; hsa-mir-548u ; hsa-mir-8085 ; hsa-mir-6731-5p ; hsa-mir-6077 ; hsa-mir-5681a ; hsa-mir-873-5p ; hsa-mir-6760-5p ; hsa-mir-9500 ; hsa-mir-6758-5p ; hsa-mir-6856-5p ; hsa-mir-3974 ; hsa-mir-548m ; hsa-mir-4503 ; hsa-mir-6792-5p ; hsa-mir-7704 ; hsa-mir-615-5p ; hsa-mir-7155-5p ; hsa-mir-1-5p ; hsa-mir-4494 ; hsa-mir-4463 ; hsa-mir-508-5p ; hsa-mir-4707-3p ; hsa-mir-6885-3p ; hsa-mir-6805-3p ; hsa-mir-5691 ; hsa-mir-3194-3p ; hsa-mir-551b-5p ; hsa-mir-4674 ; hsa-mir-7156-3p ; hsa-mir-6783-3p ; hsa-mir-1343-3p ; hsa-mir-4437 ; hsa-mir-378g ; hsa-mir-1184 ; hsa-mir-1304-3p ; hsa-mir-6742-3p ; hsa-mir-6852-5p ; hsa-mir-939-3p ; hsa-mir-6890-3p ; hsa-mir-509-5p ; hsa-mir-509-3-5p ; hsa-mir-4418 ; hsa-mir-6750-3p ; hsa-mir-3680-5p ; hsa-mir-4742-3p ; hsa-mir-4641 ; hsa-mir-3925-5p ; hsa-mir-1180-3p ; hsa-mir-6079 ; hsa-mir-4703-3p ; hsa-mir-3202 ; hsa-mir-4533 ; hsa-mir-4722-5p ; hsa-mir-20b-3p ; hsa-mir-940 ; hsa-mir-6893-5p ; hsa-mir-6808-5p ; hsa-mir-890 ; hsa-mir-4715-3p ; hsa-mir-6845-3p ; hsa-mir-1227-3p ; hsa-mir-4717-3p ; hsa-mir-342-3p ; hsa-mir-455-5p ; hsa-mir-1285-5p ; hsa-mir-329-3p ; hsa-mir-362-3p ; hsa-mir-6512-5p ; hsa-mir-8485

Nearest miRNA

hsa-mir-10397/Upstream/284149; hsa-mir-103a-1/Downstream/2540809;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/33772, chr5-CpG: 41/Downstream/118368

Upstream sequence

tacatgatgtaatcaaatcatgcatggggaaatgatccattcaaagtactagatagaatcgtgaattttTTTAATGATCAAAAATTTttttgtatattta

Downstream sequence

AAGGAATTAGTAATTTCACTTTTTATTATTTGTACCAAATGTATGTGTGTGTTGTGTATGTTGGTGTAAATGTGGAGAGGTGGTAGCAATACATACTGAT