Basic Information
VIS ID
TVIS10011617
Fusion event
HBV-chr5 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
precore/core protein|Core and e antigen|
Start
2023
Orient
+
Integrated sequence
GAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAG| |CCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGT
Host Sequence
Chromosome
chr5
Cytoband
q35.1
Reference genome
End
172192806/172765803 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
Nearest miRNA
hsa-mir-10397/Upstream/103540; hsa-mir-10523/Downstream/149280;
Nearby gene
NEURL1B(-74273) ; DUSP1(+2287) ;
Nearest cancer related gene
DUSP1(TSG, +2287) ;
Upstream sequence
ccctgcagcagctctctgttatatcctcagagcctctcaacagtgcttttggtaaataagtgctcaagaaatattcattgagtaaaGAACTAAGTTAGAA
Downstream sequence
gagatgggaagaacagtactcagatccagtgcaaattggtcattttacggggtgggaaaactgagccagaAGAACTGCCAGAAGCCATTAGGACAGAGAC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate