hsa-mir-6780a-3p _LIHC.png
GRM8 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10011635
Fusion event
HBV-GRM8 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|precore/core protein|
Start
1819
Orient
+
Integrated sequence
TTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGC| |AACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTA
Host Sequence
Chromosome
chr7
Cytoband
q31.33
Reference genome
End
126386827/126746773 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10525/Upstream/9726454; hsa-mir-10399/Downstream/311315;
Upstream sequence
TTTAAGAAAAAAGAGGATGAGGGGAAATAGAGAGAGAGGAAAGTGAGGAATTTCTTTTGACGACTTTTTGGACAAACTTGCTATTTTAGTTCACTCCCTT
Downstream sequence
tttagatatttaaatatctaaaattGCTCAATAAAGCGCGAAATGTCTTGATAACAATGATCTTTCATACAAGGAATATGCAATATAAATTATACTTCAA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate