VISDB Viral Integration Site DataBase

VIS ID

TVIS10011636

Fusion event

HBV-GRM8 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|precore/core protein|

Start

1830

Orient

+

Integrated sequence

ACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCAC| |CTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTG

Chromosome

chr7

Cytoband

q31.33

Reference genome

Start

End

126839509/127199455 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-26b-5p ; hsa-mir-491-3p ; hsa-mir-6881-3p ; hsa-mir-6780a-3p ; hsa-mir-7111-3p ; hsa-mir-877-3p

Nearest miRNA

hsa-mir-10525/Upstream/141271; hsa-mir-10399/Downstream/882406;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/2269310, chr7-CpG: 237/Downstream/51791

Upstream sequence

TTTCCATTGACAGAGATCCTGCTATGTGGCAGGCAGTGTGCCAAATACCATTTGGTTTTATGAAAGTTCTAGAACAGCCCCTGCAGTTCAATAAGTACAC

Downstream sequence

AGATGTGCCCATCTGTGTGACAAAAGAAGCAAGGCCTTTTCAAATCTTTGCAGAGATGGCACATGATAAAAGTCAGGTTCCACTGGCTTGGATGCTGATT