Basic Information
VIS ID
TVIS10011676
Fusion event
HBV-LOC105375874 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1828
Orient
+
Integrated sequence
AGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTC| |ACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATT
Host Sequence
Chromosome
chr8
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
64363976/63451418 (Hg38)
End
64363976/63451418 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105375874
Nearest miRNA
hsa-mir-124-1/Upstream/1736559; hsa-mir-10400/Downstream/927731;
Nearest TSS
ENST00000518652/Upstream/33488; ENST00000517899/Downstream/10132;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/282211, chr8-CpG: 109/Downstream/917928
Nearby gene
YTHDF3(-238630) ; LINC01289(+318012) ;
Upstream sequence
gcttaccaggggcaagctccatccatgcacagattgctttccactgcctcacctgtgaacatgagtgaacgaagatttccatattcataagggaagcttg
Downstream sequence
ACACATCATCCCTGGCTTTTAGAAATGTTATTTTCTTTTCTAAGGATTTGGATATGATATATCAAGTCTTTTCCTCCCTGTGAAATACAATCATGGATTC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate