Basic Information
VIS ID
TVIS10011733
Fusion event
HBV-chr19 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
1293
Orient
-
Integrated sequence
GCAACCCCCACTGGCTGGGGCTTGGTCATGGGCCATCAGCGCATGCGTGGAACCTTTTCGGCTCCTCTGCCGATCCATACTGCGGAACTCCTAGCCGCTT| |GTTTTGCTCGCAGCAGGTCTGGAGCAAACATTATCGGGACTGATAACTCTGTTGTCCTATCCCGCAAATATACATCGTTTCCATGGCTGCTAGGCTGTGC
Host Sequence
Chromosome
chr19
Cytoband
p13.3
Reference genome
GRCh37/hg19
Start
6284259/6284248 (Hg38)
End
6284259/6284248 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA19B
Nearest miRNA
hsa-mir-1227/Upstream/1351508; hsa-let-7e/Downstream/105390;
Nearest TSS
ENST00000633603/Upstream/4300; ENST00000594780/Downstream/49381;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/3901, chr19-CpG: 68/Downstream/77183
Nearby gene
MLLT1(-4300) ; ACER1(+22251) ;
Nearest cancer related gene
MLLT1(OG, -4300) ;
Upstream sequence
ctgggatgataggtataagccactacaccgggccGTAacggactctcgctctgtcgcccaggctagagtgcagtggcacaatctctgctcactgcaagct
Downstream sequence
ccgcctcctgggttcaagccattctcctgcctcagcctcctgagtagctgggattacaggcattcgccacgacgcccggctagtttttttgtatttttgg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate