Basic Information
VIS ID
TVIS10011752
Fusion event
HBV-chr6 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1730
Orient
-
Integrated sequence
CACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAG| |ACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCAC
Host Sequence
Chromosome
chr6
Cytoband
p22.3
Reference genome
GRCh37/hg19
Start
22283576/22283347 (Hg38)
End
22283576/22283347 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-3691/Upstream/3711467; hsa-mir-10398/Downstream/4864279;
Nearest TSS
ENST00000381078/Upstream/62566; ENST00000510882/Downstream/14154;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/616716, chr6-CpG: 100/Downstream/286008
Nearby gene
CASC15(-88960) ; PRL(+3897) ;
Upstream sequence
AGGATGGGACAGGCTGATGGCAGAGAAGGGTACAGCATTGTCCTCCCAGCCAGGCATTTTCAGAAAGGTCAATCCATGTGCTAGAAGAACAACTTCAGCA
Downstream sequence
tctccatgttggtcaggctggtcttgaactcccgccctcaggtgatccgcccgcctcagcctcccaaagtgttgggattacaggcatgagccactgtgcc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate