Proximate region of VIS (GRCh38)VISEnhancerEnhancer/PromoterPromoterGene5999013459893046599505645985948259892945598915855989491259874981598756035988523559885455598908405989098959899220598993695991440059914549599105145991057359924808
hsa-mir-550a-3-5p _LIHC.png
RPS6KB1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10011781
Fusion event
HBV-RPS6KB1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1711
Orient
-
Integrated sequence
GGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTC| |AAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAG
Host Sequence
Chromosome
chr17
Cytoband
q23.1
Reference genome
End
58002169/59924808 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10226/Upstream/83471; hsa-mir-1250/Downstream/118217;
Upstream sequence
tcatttcccctttcttgtacaaaagatagcatagtatccatgctgctgtacttttaagtactcttttgtatcttgtttttatagaaatttttcttatttt
Downstream sequence
tattttatttatttatttatttatttatttatttttttgagacggagtctcactttgtcacccaggctggagtgcagtggcgtgatctcggctcactgca
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate