Basic Information
VIS ID
TVIS10011788
Fusion event
HBV-LOC105374786 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
822
Orient
-
Integrated sequence
TGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATCTTGAGTCCCTTTTTACCGCTGTTACCAATTTTCTTTTGTCTT| |TGGGTATACATTTAAACCCTAACAAAACAAAGAGATGGGGTTACTCTCTAAATTTTATGGGTTATGTCATTGGATGTTATGGGTCCTTGCCACAAGAACA
Host Sequence
Chromosome
chr2
Cytoband
p14
Reference genome
GRCh37/hg19
Start
67871548/67644416 (Hg38)
End
67871548/67644416 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA2S
Target gene
LOC105374786
Nearest miRNA
hsa-mir-1301/Upstream/1286088; hsa-mir-10b/Downstream/1459266;
Nearest TSS
ENST00000437798/Upstream/82349; ENST00000430742/Downstream/39661;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/246704, chr2-CpG: 70/Downstream/512636
Nearby gene
ETAA1(-234015) ; C1D(+397784) ;
Upstream sequence
acaaagcacctcctaagtgcacagaactaaggtaggtactggagaacagccaataggaaatggatgctgtccttcgggagctagcgtcttacaggcagtg
Downstream sequence
agaagagaccaccatgggagaaggaaaaaaaccattgcagctggtgagaagtgaggctctatagagaagaaAGTCAACAGTCAACATTGTGCTACTCCTA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate