Basic Information
VIS ID
TVIS10011798
Fusion event
HBV-chr4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
2483
Orient
+
Integrated sequence
CCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTATTCCTTGGACTCATAAGGTGGGGAACT| |TTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATG
Host Sequence
Chromosome
chr4
Cytoband
q25
Reference genome
GRCh37/hg19
Start
112346511/111425355 (Hg38)
End
112346511/111425355 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/564708; hsa-mir-1243/Downstream/1222519;
Nearest TSS
ENST00000502981/Upstream/630952; ENST00000510034/Downstream/215140;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/785703, chr4-CpG: 120/Downstream/719959
Nearby gene
PITX2(-783232) ; FAM241A(+720042) ;
Nearest cancer related gene
PITX2(OG, -783232) ;
Upstream sequence
GCTCAATAttcttttttcttttctttgatatggagtcttactctgttgcccagcctggagtgcagtggcgtgatcttggctcactgcaacctctgcctcc
Downstream sequence
aaacaacagaagacaaatagcaaattggcaagagtaaattcttacttatcaataataacatcaaatgtaagcccactaaactctccaatcaaaaggcata
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate