VISDB Viral Integration Site DataBase

VIS ID

TVIS10011839

Fusion event

HBV-CTNNA3 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|precore/core protein|

Start

1815

Orient

-

Integrated sequence

ACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACC| |ATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACC

Chromosome

chr10

Cytoband

q21.3

Reference genome

Start

End

68266790/66507032 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-182-5p ; hsa-mir-5704 ; hsa-mir-4470 ; hsa-mir-3065-5p ; hsa-mir-3613-3p ; hsa-mir-1295b-3p ; hsa-mir-15a-3p ; hsa-mir-4717-5p ; hsa-mir-6826-3p ; hsa-mir-6891-3p ; hsa-mir-6072 ; hsa-mir-6795-3p ; hsa-mir-6887-3p ; hsa-mir-548ay-3p ; hsa-mir-548at-3p ; hsa-mir-548as-3p ; hsa-mir-548t-3p ; hsa-mir-548ap-3p ; hsa-mir-548aa ; hsa-mir-548x-3p ; hsa-mir-548j-3p ; hsa-mir-548aq-3p ; hsa-mir-548am-3p ; hsa-mir-548aj-3p ; hsa-mir-548ah-3p ; hsa-mir-548ae-3p

Nearest miRNA

hsa-mir-1265/Upstream/3133984; hsa-mir-107/Downstream/896319;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/1452729, chr10-CpG: 39/Downstream/1257053

Nearest cancer related gene

CTNNA3(TSG, No orient, 0)

Upstream sequence

ATATTGGTCATCTTTTATCCCAACTCCTATTAAATAAATATCATATTGAGATTTAATAGTGCTTAGTTTTGATGCAGTTAATTTTAACATTTTGCTCTTG

Downstream sequence

CTAACATTATTATGTGTTTTTTGGCATCAGCTTATGAAAGAACATGGAAAATCAATTTATTTTCCATTTTCTTTGTCAAATTTAGATTAAAACTTTGTAG