Basic Information
VIS ID
TVIS10011841
Fusion event
HBV-chr11 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1825
Orient
-
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr11
Cytoband
q22.3
Reference genome
GRCh37/hg19
Start
103682814/103812086 (Hg38)
End
103682814/103812086 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-10392/Upstream/2292181; hsa-let-7a-2/Downstream/37820;
Nearest TSS
ENST00000527297/Upstream/343697; ENST00000527804/Downstream/83185;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/719766, chr11-CpG: 43/Downstream/224591
Nearby gene
DYNC2H1(-332223) ; MIR4693(+37820) ;
Upstream sequence
GCACAAAGTAGGAGGGTGGCCTTGAGGCAAGCTGAAACCCACCCTGCAGGTTGGACTGGCTGCAGGTGACTGCATGCTGAGCATCAGACTAAAGTGCAGG
Downstream sequence
GAAGGAAGTCATAATGCCAGGCCATGTTCCCATAAACGGGCAGTCCAGTCAGATGGGAGGTCTCTATTGATCGCCCTTTACTGCATCATAACAGTGTCAG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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