Basic Information
VIS ID
TVIS10011884
Fusion event
HBV-chr19 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1731
Orient
-
Integrated sequence
ACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGA| |CTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACC
Host Sequence
Chromosome
chr19
Cytoband
q13.11
Reference genome
GRCh37/hg19
Start
32768495/32277589 (Hg38)
End
32768495/32277589 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10395/Upstream/11878235; hsa-let-7e/Downstream/2845111;
Nearest TSS
ENST00000633603/Upstream/171673; ENST00000587084/Downstream/68005;
Nearest CpG islands
None/Target, chr19-CpG: 112/Upstream/52805, chr19-CpG: 52/Downstream/67858
Nearby gene
THEG5(-684550) ; ZNF507(+68019) ;
Upstream sequence
agataacaaggcaagattatgaacaacttaattctcgtatatttgacagtgtatatgaaatgaacagatttattgaggattttgattcatcaaaagggat
Downstream sequence
attagaagaaatagaaaatctgtaaaagtcttaattccattaaagaagttgaatttgtaatcaaaagcaaacttgaggactaatggtttcactggtgaat
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate