VISDB Viral Integration Site DataBase

VIS ID

TVIS10011900

Fusion event

HBV-MACROD2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|precore/core protein|

Start

1824

Orient

-

Integrated sequence

TTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTT| |TTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAG

Chromosome

chr20

Cytoband

p12.1

Reference genome

Start

End

14944343/14963697 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-1238-3p ; hsa-mir-670-3p ; hsa-mir-4469 ; hsa-mir-486-5p ; hsa-mir-660-3p ; hsa-mir-4667-3p ; hsa-mir-1470 ; hsa-mir-618 ; hsa-mir-502-5p ; hsa-mir-4786-3p ; hsa-mir-1915-5p ; hsa-mir-6841-3p ; hsa-mir-153-5p ; hsa-mir-6808-3p ; hsa-mir-7973 ; hsa-mir-486-3p ; hsa-mir-4252 ; hsa-mir-4725-5p ; hsa-mir-6852-5p ; hsa-mir-6791-5p ; hsa-mir-4292 ; hsa-mir-504-5p

Nearest miRNA

hsa-mir-103a-2/Upstream/4314002; hsa-mir-1-1/Downstream/3506918;

Nearest TSS

Nearest CpG islands

None/Target, chr20-CpG: 39/Upstream/967275, chr20-CpG: 50/Downstream/1609494

Upstream sequence

TGGGTTTTGATTGACATTTTATGAGCCTTATTACTCTTGAAAACAATACTGAAAATGCCATGACAAGCTCAGGATGGAAATATGAACACACGATCCTCTT

Downstream sequence

CCTGCTGAACTAGAAAATAGCTTTTCGAAATTCTTGGAAGAAAGTGGAAAGTTCTTCATGTAGATTCATAATGATCAATCTCTTTTTGTTTCTTGGGAGG