VISDB Viral Integration Site DataBase

VIS ID

TVIS10011922

Fusion event

HBV-SPATA5 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|precore/core protein|

Start

1819

Orient

+

Integrated sequence

TTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGC| |AACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTA

Chromosome

chr4

Cytoband

q28.1

Reference genome

Start

End

124233175/123312020 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-16-5p ; hsa-mir-345-3p ; hsa-mir-186-5p ; hsa-mir-489-3p ; hsa-mir-670-5p ; hsa-mir-4732-3p ; hsa-mir-6719-3p ; hsa-mir-8066 ; hsa-mir-5706 ; hsa-mir-4782-5p ; hsa-mir-1257 ; hsa-mir-3913-3p ; hsa-mir-6839-5p ; hsa-mir-378j ; hsa-mir-4319 ; hsa-mir-125b-5p ; hsa-mir-125a-5p ; hsa-mir-6866-3p ; hsa-mir-188-5p ; hsa-mir-6513-5p ; hsa-mir-887-5p ; hsa-mir-3913-5p ; hsa-mir-3122 ; hsa-mir-450a-1-3p ; hsa-mir-6780a-5p ; hsa-mir-6779-5p ; hsa-mir-3689c ; hsa-mir-3689b-3p ; hsa-mir-3689a-3p ; hsa-mir-30b-3p ; hsa-mir-1273h-5p ; hsa-mir-6788-5p ; hsa-mir-30c-2-3p ; hsa-mir-30c-1-3p ; hsa-mir-7977 ; hsa-mir-6799-5p ; hsa-mir-6883-5p ; hsa-mir-6785-5p ; hsa-mir-4728-5p ; hsa-mir-149-3p ; hsa-mir-7106-5p ; hsa-mir-24-3p ; hsa-mir-3934-3p ; hsa-mir-2467-5p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-383-3p ; hsa-mir-6748-5p ; hsa-mir-4483 ; hsa-mir-1293 ; hsa-mir-6766-5p ; hsa-mir-6756-5p ; hsa-mir-6745 ; hsa-mir-363-5p ; hsa-mir-6811-5p ; hsa-mir-6516-5p ; hsa-mir-4722-5p ; hsa-mir-6511b-5p ; hsa-mir-1286 ; hsa-mir-873-5p ; hsa-mir-2276-3p ; hsa-mir-3121-5p ; hsa-mir-6787-3p ; hsa-mir-1304-3p ; hsa-mir-6827-3p ; hsa-mir-6736-3p ; hsa-mir-340-3p ; hsa-mir-6890-3p ; hsa-mir-216a-5p ; hsa-mir-6769a-5p ; hsa-mir-6769b-5p ; hsa-mir-4284 ; hsa-mir-3123 ; hsa-mir-3151-3p ; hsa-mir-3192-3p ; hsa-mir-3919 ; hsa-mir-4756-3p ; hsa-mir-4762-3p

Nearest miRNA

hsa-mir-12113/Upstream/8655166; hsa-mir-1305/Downstream/2195239;

Nearest TSS

Nearest CpG islands

None/Target, chr4-CpG: 46/Upstream/388737, chr4-CpG: 179/Downstream/85132

Upstream sequence

TGACTAAATCCCATCCACAGCATTACCCACAGAACAAGATTGGAGAAAGATTATCCATTAAAGAGAGAGGGCATTGCTATTATGGCTTTTGAAGACTATA

Downstream sequence

GCTCTTTTTCCAACCCCCGCCCTGGCCACCATGGTACACATGCTCATCTGGCCACTCTGTTGGATGTGTTTCCATCAGACTTTACACATACCCCTATTAG