Basic Information
VIS ID
TVIS10011927
Fusion event
HBV-chr4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2030
Orient
+
Integrated sequence
GAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGA| |GTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTG
Host Sequence
Chromosome
chr4
Cytoband
q13.1
Reference genome
GRCh37/hg19
Start
63362507/62496789 (Hg38)
End
63362507/62496789 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1574105; hsa-mir-1243/Downstream/3780035;
Nearest TSS
ENST00000502981/Upstream/331235; ENST00000507857/Downstream/631522;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1293706, chr4-CpG: 60/Downstream/852340
Nearby gene
LPHN3(-424339) ; TECRL(+1781670) ;
Upstream sequence
GATCTATATGCTAAGTAGGCTAATTCTTCAATATAATTTGGAAGTGTCATTGATGTATGCACATAAAACTCATATCACCAAGGTCCACTGAATACTAAGT
Downstream sequence
cacgttcaagcaattctcctgcctcagcctcctgagtagctgttattgcaggtgtctgccaccatgcctggctaattttCAATGTTCTtttgcccagata
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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