VISDB Viral Integration Site DataBase

VIS ID

TVIS10011943

Fusion event

HBV-CNTNAP2 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|precore/core protein|

Start

1826

Orient

-

Integrated sequence

AAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTT| |TCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAA

Chromosome

chr7

Cytoband

q35

Reference genome

Start

End

146557633/146860541 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-218-5p ; hsa-mir-99b-5p ; hsa-mir-4444 ; hsa-mir-6079 ; hsa-mir-4644 ; hsa-mir-4306 ; hsa-mir-185-5p ; hsa-mir-6077 ; hsa-mir-7-5p ; hsa-mir-4428 ; hsa-mir-571 ; hsa-mir-8087 ; hsa-mir-7161-5p ; hsa-mir-548u

Nearest miRNA

hsa-mir-10399/Upstream/3477741; hsa-mir-153-2/Downstream/517476;

Nearest TSS

Nearest CpG islands

None/Target, chr7-CpG: 39/Upstream/743549, chr7-CpG: 33/Downstream/1478861

Nearest cancer related gene

CNTNAP2(TSG, No orient, 0)

Upstream sequence

tggcaatgtctgtcaaaaagttaatgttttctcccattcaagtccatttttaaaaatttagtctacaaatatactcttgtatgatattatatagattcaa

Downstream sequence

AAACTAGATAGGGACATATTTATCTGAAAGAAAAATGGATCATATTGATCTACTCATCCCTATGAAGACTGAAAAGAGGATAGTCTATTGTGGaaaaatt