Basic Information
VIS ID
TVIS10011952
Fusion event
HBV-chr8 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
2457
Orient
+
Integrated sequence
AGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAGTAT| |TCCTTGGACTCATAAGGTGGGGAACTTTACTGGGCTTTATTCTTCTACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACAT
Host Sequence
Chromosome
chr8
Cytoband
q24.3
Reference genome
GRCh37/hg19
Start
144171220/143089803 (Hg38)
End
144171220/143089803 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA8D
Nearest miRNA
hsa-mir-1204/Upstream/913385; hsa-mir-10400/Downstream/643280;
Nearest TSS
ENST00000518652/Upstream/9346; ENST00000622500/Downstream/70237;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/4433, chr8-CpG: 140/Downstream/69638
Nearby gene
C8orf31(-35500) ; LY6H(+68111) ;
Upstream sequence
gtagaagcgcaaagacgttatctgtccaatattacaaacctagtaagtggtggaatttggccttgaacccagatctgtaactccagagccgaagtgcttc
Downstream sequence
aggacacaatccaaaattacttctacaaaaaatcaggaaaatctcaatgagcaaggaaaatggcaatcagtagctgccagtgctgagatgacatgagggt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate