Basic Information
VIS ID
TVIS10011959
Fusion event
HBV-LOC105375932 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1675
Orient
-
Integrated sequence
ACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTC| |TCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTAC
Host Sequence
Chromosome
chr8
Cytoband
q21.2
Reference genome
End
84601288/83689053 (Hg38)
Orient
-
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-12123/Upstream/3447580; hsa-mir-10400/Downstream/7516432;
Nearby gene
SNX16(-1846767) ; RALYL(+494165) ;
Upstream sequence
TGTTACTCATATCATTACTATTGTATTTAAGTACGACAAATACTAAAAATGAGAAAAATTGTAAAAAAAAGTTCAAATGCATAAAATAGGTAACGTATTA
Downstream sequence
caacgcaaggtgtagaaaccctaacaTTTTTACAAAAGGAATGTTAAATGATAGAGATAGACATGCACTATTTCACTAACAGGTTTCAAAAAGAGCAAAC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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