Basic Information
VIS ID
TVIS10011987
Fusion event
HBV-chr16 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|
Start
3201
Orient
-
Integrated sequence
TCCACCAATCGCCAGTCAGGAAGGCAGCCTACCCCGCTGTCTCCACCTTTGAGAAACACTCATCCTCAGGCCATGCAGTGG| |
Host Sequence
Chromosome
chr16
Cytoband
q11.2
Reference genome
GRCh37/hg19
Start
46427808/46393896 (Hg38)
End
46427808/46393896 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1225/Upstream/12230223; hsa-mir-11401/Downstream/3898720;
Nearest TSS
ENST00000527434/Upstream/10607009; ENST00000569239/Downstream/190357;
Nearest CpG islands
None/Target, chr16-CpG: 29/Upstream/10291183, chr16-CpG: 124/Downstream/33562
Nearby gene
ANKRD26P1(+75441) ;
Upstream sequence
actcatatggaatcatcgtcgaatggattccaatggaatcatcatcgaatggatttgaatggaaacatcatctaactgaatccaatagaatcatcatgga
Downstream sequence
attgaatcgaattgctcaccgtcgaatggaatcaaatggaatcaccgaatggaatcgaatggaatcatcattgaatggaatcaaatggagtcatcgtcga
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate