Basic Information
VIS ID
TVIS10012030
Fusion event
HBV-chr13 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1713
Orient
-
Integrated sequence
AGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAA| |AGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCA
Host Sequence
Chromosome
chr13
Cytoband
q14.2
Reference genome
GRCh37/hg19
Start
48017275/47443140 (Hg38)
End
48017275/47443140 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-2276/Upstream/3246940; hsa-mir-1267/Downstream/2553275;
Nearest TSS
ENST00000623511/Upstream/546064; ENST00000423869/Downstream/392816;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/645791, chr13-CpG: 53/Downstream/557805
Nearby gene
HTR2A(-546064) ; SUCLA2(+499516) ;
Upstream sequence
GCCTGTATTTTTTCAGCTATTGCTTTAATCATGGTGCTATGAGGTGAGCACAAGAAATTTCAATATAATTAAGGAATTGAATTGATTGTTAAGGGTGTTA
Downstream sequence
TATGTGCAACAGAATCACCTGTGAGTTCTGGGTGATGCTAGACAATGCCCACAGCTATAGTCCTGGGAAAAGATATTTGTTCCCCTCAATTAATAGGGTG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate