Basic Information
VIS ID
TVIS10012052
Fusion event
HBV-chr8 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1774
Orient
-
Integrated sequence
CTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTA| |CTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTC
Host Sequence
Chromosome
chr8
Cytoband
p21.2
Reference genome
GRCh37/hg19
Start
24947404/25089889 (Hg38)
End
24947404/25089889 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-124-1/Upstream/136022; hsa-mir-10400/Downstream/255513;
Nearest TSS
ENST00000518652/Upstream/97887; ENST00000410074/Downstream/94834;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/88977, chr8-CpG: 135/Downstream/94391
Nearby gene
NEFL(-133273) ; DOCK5(+94883) ;
Upstream sequence
ATTACACAGAGGAAGGGGCACAGCCACAGGGCAGCTGATGGTGGAAGGGAGAGGACCTGTGATTACACAGCACGTGGAGAGCACAGGTCCCAGGTCCCAG
Downstream sequence
acatctaagataacctaatgtccatgaaaggaagaatgaataagtaaattcagttggagacaaacagaatatgctttagaagttgaaataaataaaccac
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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