Basic Information
VIS ID
TVIS10012083
Fusion event
HBV-chr12 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1826
Orient
-
Integrated sequence
AAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTT| |TCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAA
Host Sequence
Chromosome
chr12
Cytoband
q23.1
Reference genome
GRCh37/hg19
Start
98192507/97798729 (Hg38)
End
98192507/97798729 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7i/Upstream/234818; hsa-mir-1178/Downstream/140327;
Nearest TSS
ENST00000382841/Upstream/522520; ENST00000548911/Downstream/493716;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/891220, chr12-CpG: 31/Downstream/658183
Nearby gene
MIR135A2(-234818) ; MIR4303(+196654) ;
Nearest cancer related gene
MIR135A2(TSG, -234818) ;
Upstream sequence
tcacccaggctggagtgcagtggcgcaatctcagctcaatgctacctctgtctcccaggttcacacaattctctgcctcagcctcccaagtagctgggat
Downstream sequence
tacaggtgcccatcaccacgcctggctaatttttttgtatttttagtagagacggggtttcaccatcttggccaggctggtcttgaactcctgacctcgt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate