RTN3 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10012202
Fusion event
HBV-RTN3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1787
Orient
-
Integrated sequence
ACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTA| |GGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTT
Host Sequence
Chromosome
chr11
Cytoband
q13.1
Reference genome
End
63524960/63757488 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-129-2/Upstream/964717; hsa-let-7a-2/Downstream/584361;
Upstream sequence
cacccaggttgaagtgcagtggcacaagctgaaagctcactgcagccttgacctctgacctcccttgctccaagtgatcctcccaccccagcctcctgag
Downstream sequence
tagctgacactacaggcatgtgccatgccctggcaaattttttattttttatagagatgggggtctcactatgttgcccaggccaggctttaacttctgg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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