VISDB Viral Integration Site DataBase

VIS ID

TVIS10012207

Fusion event

HBV-STK33 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

S protein|Polymerase|large S protein|middle S protein|

Start

490

Orient

-

Integrated sequence

CGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAG| |GATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGG

Chromosome

chr11

Cytoband

p15.4

Reference genome

Start

End

8502746/8481199 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-183-5p ; hsa-mir-103a-3p ; hsa-mir-16-5p ; hsa-mir-877-3p ; hsa-mir-10b-5p

Nearest miRNA

hsa-mir-210/Upstream/1246362; hsa-let-7a-2/Downstream/609113;

Nearest TSS

Nearest CpG islands

None/Target, chr11-CpG: 30/Upstream/212424, chr11-CpG: 55/Downstream/112651

Upstream sequence

GTGTGATGTAACATTCTGACTTGGATGTTTCATTCCACATGAGGAAAGGCACTCTGATCCTCAAGATCACTTTCAAGGGTTGAAAGCACAATCGAAGGGT

Downstream sequence

CCAGGCAACTTTCCCCTTATAGCCAGACCTCTGCAAACTTGACAACTCCAAACAGTCTACAACAAAACACCAACAACAGATTCCAAAATCCCTGTCTTCA