FAM155A _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10012231
Fusion event
HBV-FAM155A integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2254
Orient
+
Integrated sequence
GTAGTCAGTTATGTCAACACTAATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGAGAAACAGTTATAGAGT| |ATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAACACTTCCGGAGACTACTGTTGTTAGACG
Host Sequence
Chromosome
chr13
Cytoband
q33.3
Reference genome
GRCh37/hg19
Start
107828738/107176390 (Hg38)
End
107828738/107176390 (Hg38)
Orient
-
Location type
Intronic
Target gene
FAM155A
Nearest miRNA
hsa-mir-1297/Upstream/5130386; hsa-mir-1267/Downstream/354781;
Nearest TSS
ENST00000623511/Upstream/272291; ENST00000622038/Downstream/690345;
Nearest CpG islands
None/Target, chr13-CpG: 551/Upstream/258067, chr13-CpG: 148/Downstream/690554
Upstream sequence
TTGACATTACAGTACCAACCTCACAGTTTTTTTTTTTTTTTTtttttttgagaattaaataatacacatgggctggatgcggtggctcatgcctgtaatc
Downstream sequence
ccagcactttgggaggtcgaggcaggcagatcacgaggtcaggagatcgagaccatcctggctaacacggtgaaaccccatctctactaaaaatacaaaa
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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