Basic Information
VIS ID
TVIS10012234
Fusion event
HBV-chr14 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1819
Orient
+
Integrated sequence
TTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGC| |AACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTA
Host Sequence
Chromosome
chr14
Cytoband
q12
Reference genome
GRCh37/hg19
Start
26140572/25671366 (Hg38)
End
26140572/25671366 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-208a/Upstream/1527801; hsa-mir-1185-1/Downstream/1237276;
Nearest TSS
ENST00000550708/Upstream/544368; ENST00000547786/Downstream/471939;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/620960, chr14-CpG: 30/Downstream/533591
Nearby gene
STXBP6(-621477) ; NOVA1(+774517) ;
Upstream sequence
aggatggtcttgatctcctgacctcgcgatccacccgcctcggcctcccaatttagtgcATTTTCAAGTGAATTTTACTGGTTTCTAAATCttttttttt
Downstream sequence
tttttttaaattGCTTAGCGTTCAGGTTCGTGTAACTTCTGTTGGCCAAAGCTCAGAACTCACAGGTGGGACCCATGTGGAAGAGTAGAAATCTACAGCT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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