Basic Information
VIS ID
TVIS10012242
Fusion event
HBV-chr15 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
precore/core protein|
Start
1890
Orient
+
Integrated sequence
ATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGG| |TGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATC
Host Sequence
Chromosome
chr15
Cytoband
q14
Reference genome
End
39412325/39120124 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1233-1/Upstream/2147223; hsa-mir-10393/Downstream/2571461;
Nearby gene
LINC02694(-420086) ; C15orf54(+130560) ;
Upstream sequence
aaaataagcagtggggaaaggagttcatattcaataaatggtgctgagatagctggctagccatgtgcagaagaatgaaactggatccctacctttcatc
Downstream sequence
atatacaaaaattaagtcaagatgaattaaagatttaaatataagacatcaaactataagaatcctagaagaacgcccaataaacaccattctggaaact
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate