Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10012291
Fusion event
HBV-SYS1-DBNDD2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1800
Orient
-
Integrated sequence
AGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGT| |CTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGG
Host Sequence
Chromosome
chr20
Cytoband
q13.12
Reference genome
Start
End
44024168/45395528 (Hg38)
Orient
+
Location type
ncRNA_intronic
Target gene
Nearest miRNA
hsa-mir-103a-2/Upstream/987325; hsa-mir-1-1/Downstream/29982;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/31801, chr20-CpG: 140/Downstream/10290
Upstream sequence
agtgacacccaaaggatcccgtgacaTAACCTTGGTACAGTGTAGGAGAGGACTGCCCGGATGTACATGATAGGTGGTAAGGAACATTGGGAGGTGTTTT
Downstream sequence
GTGGCTGACTGTGGCCACAAAAATTTCCATTTTATTCCATCCAATATGtttttctttttttctttttccttttttttgttttagagtctcgctccgttgc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.