VISDB Viral Integration Site DataBase

VIS ID

TVIS10012307

Fusion event

HBV-ATXN7 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1750

Orient

-

Integrated sequence

CTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAG| |GAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTG

Chromosome

chr3

Cytoband

p14.1

Reference genome

Start

End

63874236/63888560 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-192-5p ; hsa-mir-423-3p ; hsa-mir-342-3p ; hsa-mir-92a-3p ; hsa-mir-17-5p ; hsa-mir-3978 ; hsa-mir-4753-3p ; hsa-mir-452-3p ; hsa-mir-5093 ; hsa-mir-9-5p ; hsa-mir-130b-5p ; hsa-mir-4635 ; hsa-mir-6833-3p ; hsa-mir-4768-5p ; hsa-mir-6873-3p ; hsa-mir-519e-5p ; hsa-mir-515-5p ; hsa-mir-502-5p ; hsa-mir-211-5p ; hsa-mir-204-5p ; hsa-mir-3124-3p ; hsa-mir-6845-3p ; hsa-mir-4685-3p ; hsa-mir-4287 ; hsa-mir-5695 ; hsa-mir-519d-5p ; hsa-mir-6832-3p ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-19a-3p ; hsa-mir-19b-3p

Nearest miRNA

hsa-let-7g/Upstream/3270690; hsa-mir-12124/Downstream/3336904;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/23879, chr3-CpG: 136/Downstream/23156

Upstream sequence

aatttgtgagaaaaaatagagtacagaaaagtaatttaaaacagttttgaggaatataaaacaaaggaaaaatggtagcttttaccacaacaatcagtaa

Downstream sequence

gaggtcaagagatcgagaccatcctggccaacatggtgaaaccctgtctctactaaaaatacaaaaatagctgggggtggtgtcaagtgcctataatccc