Basic Information
VIS ID
TVIS10012326
Fusion event
HBV-LOC105379110 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1827
Orient
-
Integrated sequence
AAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTT| |CACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAAT
Host Sequence
Chromosome
chr5
Cytoband
q21.3
Reference genome
GRCh37/hg19
Start
104650187/105314486 (Hg38)
End
104650187/105314486 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA5F
Target gene
LOC105379110
Nearest miRNA
hsa-mir-10397/Upstream/4497921; hsa-mir-103a-1/Downstream/5199343;
Nearest TSS
ENST00000502646/Upstream/68122; ENST00000513676/Downstream/78484;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/2054637, chr5-CpG: 253/Downstream/2354943
Nearby gene
RAB9BP1(-214388) ;
Upstream sequence
cctcagccttctgagtagcttggattacaggcgcccgctaccacgcctggctaatttttgtattttttagtagagacggggtttcatcatgttggccagg
Downstream sequence
gagtgtgtgtgtgtgcgcgcacgcgcgcacgcgtgcttatgtcaaatgcttttttgattttttccatggtaaccttgcattactaacagaaattcacttg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate